FastQCFastQC Report
Wed 8 May 2024
EGAF00007962881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445525
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT22580.5068177992256326No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15630.35082206385724707No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11510.2583468941136861No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11330.25430671679479266No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10490.23545255597328996No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10450.2345547387913136No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC8700.19527523707984962No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7430.16676954155210147No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6950.15599573536838562No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6020.13512148588743617No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5750.129061219909096No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5220.11716514224790976No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5130.11514505358846305No Hit
TCCACCACTCTGGTAGACGTCAACAAAGATGCA5090.11424723640648674No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGGGC4610.10347343022277089No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACGCC4570.10257561304079457No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4460.10010661579035968No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)