FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007962882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434751
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10640.24473779243751023No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10580.24335769210421598No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9970.22932667204905796No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA8420.19367408010562367No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8000.18401337777256407No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7710.17734289282830862No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6690.1538811871623067No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6350.14606061860697273No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6070.13962015038493297No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5790.13317968216289322No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5520.1269692306630692No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5190.11937867882995093No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4930.11339824405234261No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4870.11201814371904838No Hit
AACAATGGCGGTGCCACGGTTTTCGATCGCGGTCGCGTTCA4820.11086806010796985No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4540.10442759188593011No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGT4360.10028729088604742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)