FastQCFastQC Report
Wed 8 May 2024
EGAF00007962883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434751
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT22250.5117872069299438No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21240.4885555179861576No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15120.3477852839901461No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11150.25646864527051116No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC10930.25140827738176563No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9950.22886663860462655No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9910.2279465717157637No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC9350.21506563527168426No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6850.15756145471775798No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6740.15503127077338524No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5820.13386973232954036No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5290.12167884605210799No Hit
TCCACCACTCTGGTAGACGTCAACAAAGATGCA5190.11937867882995093No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4700.10810785944138138No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACGCC4570.10511764205257722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)