FastQCFastQC Report
Wed 8 May 2024
EGAF00007962884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437952
Total Bases17.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG16080.36716352476983777No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT15960.36442349846558525No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13330.3043712552973842No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11120.2539091041940669No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10840.24751570948414436No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10690.24409067660382872No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10610.2422639924009937No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10530.2404373081981587No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10290.23495725558965366No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10160.23198889376004678No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT8460.19317185444980273No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8410.19203017682303083No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8090.18472344001169078No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7920.18084173608066637No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7770.17741670320035072No Hit
CGGGTAAGCGGTCGGCGGGGTTGCTGCAGTAACACCAGCAC6490.14818975595499048No Hit
ACGAACGTTAACAGCACGTGGGCGGTTCGGGTCACGGCGCA5930.1354029665351454No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5670.12946624287593161No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5560.12695455209703346No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5200.11873447318427591No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTT5150.11759279555750402No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5100.11645111793073214No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5070.115766111354669No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4970.11348275610112524No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG4830.11028605874616397No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC4780.10914438111939208No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG4700.10731769691655706No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC4640.1059476837644308No Hit
CGGTTTCTGGCCTTCGGCACCCCAGGAGAAGCGGGACAGGC4410.10069596668128014No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)