FastQCFastQC Report
Wed 8 May 2024
EGAF00007962885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437952
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG24880.5680987870816893No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT23720.5416118661405817No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT21840.49868478737395877No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG16100.36762019582054656No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13320.3041429197720298No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11520.263042525208242No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11340.25893248575186323No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11230.25642079497296505No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10950.25002740026304254No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10850.2477440450094988No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA10100.2306188806079205No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT8200.18723513079058893No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC8180.18677845973988016No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7880.17992839397924887No Hit
GTAACCAACCGTGAAGCGGAATTTTCTGGCACG6590.15047311120853427No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5910.13494629548443665No Hit
CGTGCATCCGTCACTTCTCGCGGCTACCCGCCG5700.13015124945199474No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5510.12581287447026157No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5470.12489953236884407No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5450.12444286131813533No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5440.12421452579278094No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5360.12238784158994592No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCCGC5340.12193117053923717No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5300.12101782843781966No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5240.1196478152856934No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5070.115766111354669No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA5050.11530944030396025No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4860.11097106532222709No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC4690.1070893613912027No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4420.10092430220663452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)