FastQCFastQC Report
Wed 8 May 2024
EGAF00007962886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421437
Total Bases17.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15360.36446728692544794No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT15260.36209445302619375No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13110.31107852419222803No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10790.25602877772953014No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10700.25389322722020136No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10660.2529440936604997No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10200.24202905772393027No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10100.23965622382467605No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9920.23538512280601845No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9670.22945303805788292No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7850.18626746109145612No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7610.18057265973324602No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7580.17986080956346975No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7440.17653884210451384No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7070.16775935667727324No Hit
CGGGTAAGCGGTCGGCGGGGTTGCTGCAGTAACACCAGCAC6220.14759026853361237No Hit
ACGAACGTTAACAGCACGTGGGCGGTTCGGGTCACGGCGCA5790.13738708276681924No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5770.1369125159869684No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5630.1335905485280125No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5430.12884488072950404No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5220.1238619295410702No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4990.1184044115727855No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC4670.110811343095172No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT4620.10962492614554488No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC4600.10915035936569405No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG4440.1053538251268873No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG4380.10393012478733475No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTT4380.10393012478733475No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)