FastQCFastQC Report
Wed 8 May 2024
EGAF00007962887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421437
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG25010.59344575820348No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT21990.5217861744460026No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21260.5044644869814467No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT21160.5020916530821926No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG15350.3642300035355225No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13090.3106039574123772No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11180.2652828299366216No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT11080.2629099960373674No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC10990.2607744455280386No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC10890.2584016116287844No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10220.2425036245037811No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA9920.23538512280601845No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7700.1827082102425748No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7300.17321687464555793No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7230.17155589091607998No Hit
GTAACCAACCGTGAAGCGGAATTTTCTGGCACG6310.1497258190429412No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5830.13833621632652093No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5810.1378616495466701No Hit
CGTGCATCCGTCACTTCTCGCGGCTACCCGCCG5490.1302685810690566No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5340.12670933022017525No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5260.12481106310077189No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5120.12148909564181597No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5010.11887897835263633No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4950.11745527801308381No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4910.11650614445338212No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCCGC4750.11270961021457536No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC4580.1086757925858432No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA4560.10820122580599235No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC4420.10487925834703644No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4280.10155729088808055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)