FastQCFastQC Report
Wed 8 May 2024
EGAF00007962888

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962888
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438816
Total Bases17.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT16380.3732771822358346No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG16080.36644060380660687No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13760.3135710639539123No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11460.26115729599649967No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10980.2502187705097353No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10900.2483956829286079No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10560.24064756070881643No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10540.2401917888135346No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10440.23791292933712538No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10030.22856960548384742No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT8110.1848155035367899No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8020.1827645300080216No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7890.17980201268868956No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7850.17889046889812585No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7700.175472179683512No Hit
CGGGTAAGCGGTCGGCGGGGTTGCTGCAGTAACACCAGCAC6800.15496244439582876No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG6110.13923831400860498No Hit
ACGAACGTTAACAGCACGTGGGCGGTTCGGGTCACGGCGCA5920.1349084810034274No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5750.13103441989353168No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5550.1264767009407132No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5530.12602092904543133No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4990.1137150878728214No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG4970.11325931597753958No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT4940.1125756581346168No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC4860.11075257055348937No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTT4670.10642273754831182No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC4640.10573907970538904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)