FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007962889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438816
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG26590.6059487347772187No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT23960.5460147305476555No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT22180.5054510318675709No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG16370.37304929628819367No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13460.30673448552468463No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11680.2661707868446No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT11460.26115729599649967No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11410.26001786625829504No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11400.25978998031065414No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10640.24247064828994383No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA9850.2244676584263108No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT8300.18914533654196747No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7830.178434697002844No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7830.178434697002844No Hit
GTAACCAACCGTGAAGCGGAATTTTCTGGCACG6970.1588365055057245No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC6350.14470757675198717No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5910.13468059505578647No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5900.13445270910814555No Hit
CGTGCATCCGTCACTTCTCGCGGCTACCCGCCG5870.1337690512652228No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5600.1276161306789178No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5450.12419784146430395No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5390.12283052577845839No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5110.11644971924451251No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5100.11622183329687158No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCCGC5040.11485451761102604No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5010.11417085976810326No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4980.11348720192518048No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC4870.11098045650113032No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4630.10551119375774812No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA4590.10459964996718443No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)