FastQCFastQC Report
Wed 8 May 2024
EGAF00007962890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426140
Total Bases17.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT15370.36067958886750834No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG15230.3573942835687802No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13570.3184399493124325No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11310.2654057352043929No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT11000.2581311306143521No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10580.24827521471816774No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10550.24757122072558316No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10090.23677664617261932No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9920.23278734688130664No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9850.23114469423194256No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT8290.19453700661754353No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT8210.1926596893039846No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7510.176233162810344No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7510.176233162810344No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7050.1654385882573802No Hit
CGGGTAAGCGGTCGGCGGGGTTGCTGCAGTAACACCAGCAC6850.1607452949734829No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5940.13939081053175015No Hit
ACGAACGTTAACAGCACGTGGGCGGTTCGGGTCACGGCGCA5740.13469751724785284No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5690.1335241939268785No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5390.12648425400103253No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5200.12202562538133008No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC4910.11522035011967899No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTT4840.11357769747031492No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4690.11005772750739193No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA4680.10982306284319707No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT4640.10888440418641761No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG4580.10747641620124841No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC4510.10583376355188437No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT4320.1013751349321819No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)