FastQCFastQC Report
Wed 8 May 2024
EGAF00007962891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426140
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG25100.5890083071291125No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT22890.5371474163420472No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT21120.49561177077955604No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20430.4794199089501103No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG15120.3548129722626367No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13120.3078800394236636No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11310.2654057352043929No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11270.2644670765476135No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC10810.25367250199464964No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA10500.2463978974046088No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10290.24146993945651662No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9190.2156568263950814No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT8490.19923029990144087No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7810.18327310273619No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7300.17130520486225184No Hit
GTAACCAACCGTGAAGCGGAATTTTCTGGCACG6700.1572253250105599No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5820.13657483456141173No Hit
CGTGCATCCGTCACTTCTCGCGGCTACCCGCCG5660.1328201999342939No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5630.1321162059417093No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5520.12953489463556578No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5460.12812690665039658No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5280.12390294269488901No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5160.1210869667245506No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5130.12038297273196602No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCCGC5010.11756699676162764No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA4960.11639367344065332No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC4900.1149856854554841No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4730.1109963861641714No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC4490.10536443422349462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)