FastQCFastQC Report
Wed 8 May 2024
EGAF00007962892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458150
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG20300.44308632543926657No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC15800.34486521881479865No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15500.3383171450398341No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13880.3029575466550256No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11290.24642584306449855No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8860.19338644548728584No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTG7970.17396049328822438No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7840.1711229946524064No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7050.1538797337116665No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6990.15257011895667358No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA6470.14122012441340173No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5990.1307432063734585No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG5560.12135763396267597No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGT5320.11611917494270436No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4680.10214995088944669No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4600.10040379788278947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)