FastQCFastQC Report
Wed 8 May 2024
EGAF00007962893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458150
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT34000.7421150278293136No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA20980.4579286259958529No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16080.3509767543380989No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15510.3385354141656663No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT15250.33286041689403034No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14110.30797773654916516No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT9260.20211721052057185No Hit
CTGGACACCAACTCCGTTTATGAACCGTACTAT8490.18531048783149623No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC6380.13925570228091239No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA5820.1270326312343119No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5490.11982975008185091No Hit
TACGACGACTTCCATACCGATGAAGATAAACTG5340.11655571319436867No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5180.11306340718105425No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4880.10651533340608971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)