FastQCFastQC Report
Wed 8 May 2024
EGAF00007962894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444902
Total Bases18.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG20520.46122516868883484No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14500.3259144710520519No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC14370.3229924792426197No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13740.3088320573969099No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10630.2389290225712629No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9040.20319081505589995No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7860.1766681201702847No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTG7830.17599381436810801No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7210.16205816112312374No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6600.148347276478865No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5810.13059055702154632No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5750.129241945417193No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGT5020.11283383756422762No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG4900.110136614355521No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4730.10631554814318658No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4480.10069633312504776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)