FastQCFastQC Report
Wed 8 May 2024
EGAF00007962895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444902
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT31210.7015028028644511No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22820.512921946855712No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA21130.47493605333309363No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16170.36345082737321927No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15570.3499647113296861No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13980.31422650381432315No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13500.3034376109794966No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT9450.21240632768564763No Hit
CTGGACACCAACTCCGTTTATGAACCGTACTAT8240.1852093269978557No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5710.1283428710142908No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5410.1215998129925242No Hit
TACGACGACTTCCATACCGATGAAGATAAACTG5160.11598059797438537No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA5040.11328337476567873No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4650.10451739933738217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)