FastQCFastQC Report
Wed 8 May 2024
EGAF00007962896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458374
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG20880.45552321903074783No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC16260.3547321619463582No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC14990.32702552937121215No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14000.30542744571027153No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10590.23103404643369826No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8710.1900195037240332No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7540.1644944957611034No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTG7540.1644944957611034No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7060.15402269762246548No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6710.1463870114797087No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6160.1343880761125195No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5860.12784320227587082No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG5530.12064384105555725No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4800.1047179813863788No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGT4710.1027545192353842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)