FastQCFastQC Report
Wed 8 May 2024
EGAF00007962897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458374
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT33820.7378254438515274No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA21600.4712309162387046No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16430.35844092378712583No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15970.34840545057093114No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14140.30848172016737424No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14130.3082635577061526No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8900.19416459048724402No Hit
CTGGACACCAACTCCGTTTATGAACCGTACTAT8320.18151116773638992No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6060.13220645150030325No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA5790.12631606504731943No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5710.12457076535754645No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5690.12413444043510322No Hit
TACGACGACTTCCATACCGATGAAGATAAACTG4940.10777225584348152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)