FastQCFastQC Report
Wed 8 May 2024
EGAF00007962898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448951
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG20410.4546153143661557No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15320.3412399125962522No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC14670.3267617178712154No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13620.3033738648538482No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10920.24323367138061835No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT8520.18977572162663633No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7680.1710654392127426No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTG7600.1692835075542765No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7400.16482867840811136No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6290.14010437664689465No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6020.13409035729957167No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5630.1254034404645496No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG5050.11248443594067059No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACG4860.10825234825181368No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGT4710.10491122639218978No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4640.10335203619103199No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)