FastQCFastQC Report
Wed 8 May 2024
EGAF00007962899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448951
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT31960.7118816975571944No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23040.5131963176382277No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA20910.4657523872315687No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15980.3559408487785972No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15200.338567015108553No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14620.3256480105846741No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC13780.3069377281707803No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT8700.19378506785818497No Hit
CTGGACACCAACTCCGTTTATGAACCGTACTAT7940.17685671710275733No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5500.12250780151954223No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA5290.1178302309160688No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5110.11382088468452013No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTGAA4770.10624767513603935No Hit
TACGACGACTTCCATACCGATGAAGATAAACTG4720.10513396784949805No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4700.10468848493488153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)