FastQCFastQC Report
Wed 8 May 2024
EGAF00007962900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474860
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9150.19268837130943858No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7230.1522554015920482No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7010.14762245714526387No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6920.1457271616897612No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6480.13646127279619255No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5480.1154024344017184No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5400.11371772733016047No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5220.10992713641915512No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4760.100240070757697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)