FastQCFastQC Report
Wed 8 May 2024
EGAF00007962901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474860
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG13750.28955902792401966No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12220.25733900518047426No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7880.1659436465484564No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7510.15815187634250094No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7330.1543612854314956No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5710.12024596723244746No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5660.11919302531272376No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5340.11245419702649202No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5230.11013772480309987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)