FastQCFastQC Report
Wed 8 May 2024
EGAF00007962902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461300
Total Bases18.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9230.20008671146759158No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6750.1463256015608064No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6740.14610882289182744No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6390.13852156947756342No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6250.13548666811185778No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5210.11294168653804466No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5190.11250812920008671No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4740.10275308909603294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)