FastQCFastQC Report
Wed 8 May 2024
EGAF00007962904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476329
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9840.20657990590537212No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7320.15367529585643538No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7080.14863676156606043No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6800.14275847156062302No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5890.12365402904295142No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5810.12197451761282643No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5390.11315708260467029No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5350.1123173268896078No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT4810.10098062473626421No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)