FastQCFastQC Report
Wed 8 May 2024
EGAF00007962905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476329
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14040.2947542559869334No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13000.2729206073953087No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8220.17256979944534134No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7690.16144303622076336No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7230.15178584549754476No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5880.12344409011418578No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5680.11924531153887336No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5590.11735586117998274No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5240.11000799867318597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)