FastQCFastQC Report
Wed 8 May 2024
EGAF00007962906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457771
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7490.16361892736761394No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7480.1634004775313421No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7060.15422558440792447No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6540.1428661929217884No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6170.13478354897973002No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6130.13390974963464264No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5840.12757470438275906No Hit
GTCACCACGACGGTAGTGATGGGTAGCCATATCGTCGGTGC5800.12670090503767167No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5790.12648245520139983No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5640.1232057076573221No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5230.11424926437017635No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA4860.10616662042811797No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4690.10245297321149659No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT4660.10179762370268104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)