FastQCFastQC Report
Wed 8 May 2024
EGAF00007962907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457771
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15220.33248065080575223No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10190.22260038316101283No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7120.15553628342555556No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6580.1437399922668758No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6530.14264774308551656No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6500.14199239357670101No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6340.13849719619635145No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6160.13456509914345818No Hit
CAGCCGCCAGCAGTGCGTCTGGAAGGTCAGTGC6140.1341281994709145No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5950.12997765258174937No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5820.12713780471021535No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5760.1258271056925843No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5660.1236426073298658No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5110.11162786633491417No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA4920.10747731944574906No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4610.10070537452132179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)