FastQCFastQC Report
Wed 8 May 2024
EGAF00007962908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444978
Total Bases18.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6960.15641222712134084No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6920.1555133062758159No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6880.15461438543029093No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6530.14674882803194764No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6190.1391080008449856No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6120.13753488936531694No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5990.13461339661736085No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5520.12405107668244274No Hit
GTCACCACGACGGTAGTGATGGGTAGCCATATCGTCGGTGC5510.12382634647106149No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5320.119556472454818No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5180.11641024949548068No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG4940.111016724422331No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4630.10405008786951264No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT4600.10337589723536894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)