FastQCFastQC Report
Wed 8 May 2024
EGAF00007962909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444978
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22150.4977774182094396No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15420.3465339859498672No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9400.21124639869836262No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6760.1519176228937161No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6560.14742301866609134No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6480.14562517697504146No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6350.14270368422708538No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6040.13573704767426703No Hit
CAGCCGCCAGCAGTGCGTCTGGAAGGTCAGTGC5800.13034352260111737No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5770.12966933196697364No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5700.12809622048730498No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5700.12809622048730498No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5380.1209048537231054No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5130.11528659843857449No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA4600.10337589723536894No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4510.10135332533293781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)