FastQCFastQC Report
Wed 8 May 2024
EGAF00007962910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459546
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7420.1614637054832378No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7280.1584172204741201No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6680.14536085614932998No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6500.14144394685189296No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6440.14013831041941394No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6210.13513337076157772No Hit
GTCACCACGACGGTAGTGATGGGTAGCCATATCGTCGGTGC6050.13165167360830035No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6030.1312164614641407No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5990.13034603717582136No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5630.12251221858094728No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5210.1133727635535942No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5160.11228473319319501No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4980.10836782389575798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)