FastQCFastQC Report
Wed 8 May 2024
EGAF00007962911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459546
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16480.3586148067875686No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10240.22282861780975136No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7170.15602355368124193No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6680.14536085614932998No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6630.1442728257889308No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6610.14383761364477116No Hit
CAGCCGCCAGCAGTGCGTCTGGAAGGTCAGTGC6590.14340240150061148No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6550.14253197721229213No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6370.13861506791485512No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6350.13817985577069541No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5790.12599391573422464No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5690.12381785501342629No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5510.11990094571598926No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5210.1133727635535942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)