FastQCFastQC Report
Wed 8 May 2024
EGAF00007962912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448916
Total Bases18.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7350.16372773525559348No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7220.1608318705503925No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7200.1603863529034385No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7130.1588270411390995No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6420.14301116467223268No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6160.13721943526183072No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5980.13320977643924475No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5780.12875459996970479No Hit
GTCACCACGACGGTAGTGATGGGTAGCCATATCGTCGGTGC5340.11895321173671689No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5260.11717114114890091No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5260.11717114114890091No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5230.11650286467846992No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4680.10425112938723503No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAG4530.10090974703508007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)