FastQCFastQC Report
Wed 8 May 2024
EGAF00007962913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448916
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21840.48650527047376346No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16150.35975549991535166No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10030.22342709994742893No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7180.1599408352564845No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6840.15236703525826656No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6770.1508077234939276No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6470.14412495878961765No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6090.13566012349749174No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5920.13187322349838276No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5840.13009115291056678No Hit
CAGCCGCCAGCAGTGCGTCTGGAAGGTCAGTGC5800.12920011761665878No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5550.12363114702973385No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5490.12229459408887185No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5140.11449803526717693No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA4730.10536492350462003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)