FastQCFastQC Report
Wed 8 May 2024
EGAF00007962914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484203
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG10580.21850339630279034No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG9880.20404664985553578No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9420.1945465021901971No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9040.18669855411883032No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC8730.180296280692189No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8700.17967670584444956No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7450.1538610871886378No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC7350.1517958376961729No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG7150.14766533871124302No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC7130.14725228881275004No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7060.14580661416802457No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT7050.14560008921877807No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7050.14560008921877807No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT6770.13981739063987625No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5780.11937142066447337No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT5650.11668659632426896No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5640.11648007137502246No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5390.11131694764386013No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTT5270.1088386482529022No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5230.10801254845591622No Hit

[OK]Adapter Content

Adapter graph