FastQCFastQC Report
Wed 8 May 2024
EGAF00007962915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484203
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16320.33704871717027773No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT10760.22222084538922726No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC10750.22201432043998073No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9780.20198140036307086No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9180.18958990340828125No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8990.18566592937259785No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG8910.1840137297786259No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT8890.18360067988013293No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8660.17885060604746356No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA8140.1681113086866459No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG8120.16769825878815292No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7860.16232861010774408No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC7270.15014363810220094No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7140.14745881376199652No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA7100.14663271396501054No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5920.1222627699539243No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5920.1222627699539243No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5860.12102362025844533No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG5550.11462134683180403No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5480.11317567218707857No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTTCC5400.1115234725931066No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACGTC4960.10243637482626089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)