FastQCFastQC Report
Wed 31 May 2023
EGAF00007962916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470800
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG10880.2310960067969414No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9440.20050977060322855No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG9360.19881053525913336No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8780.18649107901444348No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8100.17204757858963465No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC7900.16779949022939677No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC7160.15208156329651656No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6990.14847068819031436No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6970.14804587935429056No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT6920.1469838572642311No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6850.14549702633814784No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC6630.14082412914188613No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6400.13593882752761258No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6340.13466440101954122No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT5770.12255734919286321No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5360.11384876805437553No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5190.11023789294817331No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5140.10917587085811384No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTT5050.1072642310960068No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG4750.10089209855564997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)