FastQCFastQC Report
Wed 8 May 2024
EGAF00007962917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470800
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23680.5029736618521665No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15720.3338997451146984No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC11090.23555649957519115No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT9620.20433305012744263No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9280.19711129991503823No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9180.1949872557349193No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG8890.18882752761257435No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8310.17650807136788446No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8300.17629566694987256No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT8100.17204757858963465No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG7660.1627017841971113No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA7430.15781648258283773No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7110.1510195412064571No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7090.1505947323704333No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC6580.13976210705182668No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6320.13423959218351741No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5460.11597281223449447No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG5450.11576040781648257No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5370.11406117247238741No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTTCC5130.10896346644010196No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5020.10662701784197111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)