FastQCFastQC Report
Wed 8 May 2024
EGAF00007962918

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962918
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485903
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG11150.229469667814358No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG9780.20127474002012746No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9170.18872079406795184No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9020.1856337581780726No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8960.18439894382212088No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8020.16505351891221087No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC7840.16134907584435576No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT7410.15249957296003522No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC7260.14941253707015598No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7200.14817772271420426No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG7130.14673710596559394No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC7020.14447327964634918No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT6650.13685859111798032No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6450.132742543264808No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5920.12183501645390128No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT5650.11627835185211864No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5580.11483773510350831No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5440.11195650160628769No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)