FastQCFastQC Report
Wed 8 May 2024
EGAF00007962919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485903
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16680.34327839095457324No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC11450.23564373959411652No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT10230.21053584768976524No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9870.20312696155405505No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA9200.18933820124592768No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG9040.1860453629633898No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8940.18398733903680364No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8850.1821351175028761No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT8200.16875796198006598No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG8070.16608253087550395No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7720.15887944713245236No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA7650.15743883038384204No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA7530.15496920167193864No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7240.14900093228483874No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC7120.14653130357293534No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6050.12451044755846333No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5830.11998279491997374No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG5720.11771896860072895No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5510.11339711835489799No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACGTC5150.10598823221918778No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTTCC5120.10537082504121192No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC4890.10063737001006373No Hit

[OK]Adapter Content

Adapter graph