FastQCFastQC Report
Wed 8 May 2024
EGAF00007962920

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962920
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473868
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG10710.2260123072247968No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG9520.20089982864426378No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9240.19499101015472664No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9050.1909814547511121No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC8520.17979690546734534No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8070.17030059003773204No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7830.1652358884752716No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7480.15784986536335013No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC7280.15362928072796644No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG7010.14793149147019846No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGT6910.1458211991525066No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC6900.14561016992073744No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6840.1443439945301223No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6180.13041606523335614No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGT5760.12155283749905037No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5730.12091974980374282No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTT5020.10593667434813071No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA4960.10467049895751561No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG4750.10023888509036272No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG4740.10002785585859354No Hit

[OK]Adapter Content

Adapter graph