FastQCFastQC Report
Wed 8 May 2024
EGAF00007962921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473868
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21880.4617319591109761No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16390.3458769108696937No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC10720.22622333645656595No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT9990.21081820253741548No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9610.20279909173018645No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9140.19288071783703478No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG9020.19034836705580457No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT8650.18254028548034473No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8590.18127411008972963No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8210.1732549992825006No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG8060.17008956080596285No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA7660.16164839153519545No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC7300.1540513391915048No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA7040.14856457916550603No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6860.1447660529936607No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC6820.14392193606658393No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5880.12408518828028058No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAACAG5430.11458887285066728No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5150.10868005436113011No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTTCC5130.10825799589759173No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC4850.10234917740805456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)