FastQCFastQC Report
Wed 8 May 2024
EGAF00007962922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501881
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT17480.34828973402061447No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9090.18111863170751633No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9010.17952462834815425No Hit
GTACAGACCGACACGTGGGCGTGGGAACGCACGCGGCAGCG8950.17832912582863267No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA8920.17773137456887192No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7310.14565205696171005No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAG6940.13827979142466043No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6890.13728353932505913No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6470.1289150216884082No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6390.12732101832904613No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5950.1185539998525547No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5760.11476824187406974No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5610.11177948557526585No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5560.11078323347566456No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGG5490.10938848053622273No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5410.10779447717686064No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5410.10779447717686064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)