FastQCFastQC Report
Wed 8 May 2024
EGAF00007962923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501881
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG17600.3506807390596576No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT14900.29688312568118735No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9750.19426915942225348No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8960.17852837624855294No Hit
GTGGAAGCAAGCGGTCACATCCTGATCTCCGCT8820.17573887036966931No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA8650.17235161323102488No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8540.17015985861190203No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7920.1578063325768459No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCCGC7440.14824231242067343No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6790.13529103512585652No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6320.1259262653896043No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG6270.124930013290003No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6100.1215427561513586No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6060.12074575447167754No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5950.1185539998525547No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5920.11795624859279391No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGAAA5820.1159637443935913No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5800.11556524355375078No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5630.11217798641510637No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5550.11058398305574428No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5460.10879072927646195No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5230.10420796961829598No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5220.1040087191983757No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5060.10082071247965155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)