FastQCFastQC Report
Wed 8 May 2024
EGAF00007962924

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962924
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487638
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT15430.31642324839327535No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9140.18743412121286693No Hit
GTACAGACCGACACGTGGGCGTGGGAACGCACGCGGCAGCG8870.18189722704137085No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA8240.16897780730788003No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7860.16118514143688556No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7200.14765051123989517No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7030.14416431861339762No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7020.1439592484588978No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6680.13698686320590273No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAG6570.13473109150640433No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6190.12693842563540986No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6090.12488772409041132No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5960.12222181208191323No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5470.11217337451142036No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5240.10745676095792371No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGG5180.10622634003092457No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5030.10315028771342677No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT4980.1021249369409275No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC4940.10130465632292808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)