FastQCFastQC Report
Wed 8 May 2024
EGAF00007962925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487638
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23380.4794540212206596No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG15150.3106812840672794No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT14380.2948908821707906No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8960.18374285843186955No Hit
GTGGAAGCAAGCGGTCACATCCTGATCTCCGCT8610.17656540302437465No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8370.17164371931637812No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG8110.16631189529938192No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA8050.1650814743723828No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7610.1560583875743892No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7320.15011135309389342No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCCGC7050.14457445892239734No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6420.13165503918890653No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC6230.1277587062534093No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG6220.12755363609890943No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6170.12652828532641017No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5770.118325479146416No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5760.11812040899191613No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5700.116889988064917No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGAAA5550.1138139357474192No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5280.10827704157592313No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5210.10684155049442415No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5190.10643141018542443No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA4980.1021249369409275No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACGTC4920.10089451601392836No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG4890.10027930555042881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)