FastQCFastQC Report
Wed 8 May 2024
EGAF00007962926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504271
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT16730.3317660543636259No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9390.1862093993110847No Hit
GTACAGACCGACACGTGGGCGTGGGAACGCACGCGGCAGCG9360.1856144811024231No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9210.18263989005911505No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA8990.17827715652892986No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7710.1528939796260344No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAG7600.15071261286094184No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7300.1447634307743257No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6950.13782271833994023No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6400.12691588451447736No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6140.12175992670607669No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6060.12017347814964573No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5860.11620735675856832No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5660.1122412353674909No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGG5560.11025817467195217No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5430.10768019576775187No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5420.107481889698198No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5350.10609374721132091No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5170.10252423795935123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)