FastQCFastQC Report
Wed 8 May 2024
EGAF00007962927

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962927
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504271
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG16710.3313694422245182No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT14800.29349298293972886No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10160.20147896666673276No Hit
GTGGAAGCAAGCGGTCACATCCTGATCTCCGCT9150.18145005364179181No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9110.18065682936357633No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8880.1760957897638373No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA8650.17153475016409828No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCCGC8050.15963638599086602No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7970.15804993743443507No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7310.14496173684387959No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6700.13286506660109346No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6190.12275145705384605No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC6160.12215653884518445No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6130.12156162063652282No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6120.12136331456696894No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6020.11938025387143024No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGAAA5940.11779380531499928No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5900.11700058103678379No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5820.11541413248035283No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5620.1114480110892754No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5510.10926664432418284No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5510.10926664432418284No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5490.10887003218507509No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5400.10708527755909024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)