FastQCFastQC Report
Wed 8 May 2024
EGAF00007962928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491351
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT15450.31443916874087974No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9490.19314095219099991No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9040.18398252980048885No Hit
GTACAGACCGACACGTGGGCGTGGGAACGCACGCGGCAGCG8590.1748241074099778No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA8490.1727889024343087No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7580.15426853715571964No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7030.14307490978953946No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6900.1404291433211696No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6830.1390044998382012No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAG6580.1339164873990284No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6350.12923551595498942No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT5850.11905949107664379No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5470.11132571216910112No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5450.1109186711739673No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5370.109290507193432No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGG5350.10888346619829815No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5160.10501657674452682No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG4930.10033560530048784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)