FastQCFastQC Report
Wed 8 May 2024
EGAF00007962929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491351
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22480.45751407853041914No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG15530.316067332721415No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT14800.30121033639903044No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9550.1943620751764014No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9470.1927339111958661No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8510.1731959434294425No Hit
GTGGAAGCAAGCGGTCACATCCTGATCTCCGCT8420.17136425895134028No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA8210.16709032850243513No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7660.15589670113625495No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7180.14612771725304313No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6930.14103970481387035No Hit
CAGACTGTTACCTCTACCCCGGTCCAGGGCCGC6700.13635873336983134No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6500.1322883234184931No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG6290.12801439296958794No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA5990.12190877804258056No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5980.12170525754501364No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5830.11865245008150997No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5680.11559964261800626No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGAAA5600.11397147863747097No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5550.11295387614963641No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5550.11295387614963641No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5350.10888346619829815No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5320.10827290470559743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)