FastQCFastQC Report
Wed 8 May 2024
EGAF00007962938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490566
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15840.3228923325301794No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14240.29027694540591886No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14140.2882384837106526No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6820.1390230876171606No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6640.13535385656568127No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5880.11986154768165751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)