FastQCFastQC Report
Wed 8 May 2024
EGAF00007962939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490566
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG34010.6932808225600633No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14100.2874230990325461No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7270.14819616524585885No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6890.14045001080384698No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6420.13086924083609544No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5960.12149231703787054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)